SNP Report

Basic Infomation

Name	rs2549783 dbSNP
Location	chr:5,96231372
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 107)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10038651	0.85[EUR][1000 genomes]
rs10044354	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs10051637	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10058476	1.00[CEU][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap];0.89[EUR][1000 genomes]
rs10077945	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10434709	0.85[CEU][hapmap]
rs1046395	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1046396	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10476696	0.85[EUR][1000 genomes]
rs11135484	0.85[CEU][hapmap]
rs1216566	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1216567	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1216571	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12516666	0.86[CEU][hapmap]
rs13167902	0.85[CEU][hapmap]
rs13170029	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13358339	0.85[EUR][1000 genomes]
rs1363907	0.96[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1363908	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1363974	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1363976	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1423357	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1423566	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1477364	1.00[CEU][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1544777	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[EUR][1000 genomes]
rs1559355	0.86[CEU][hapmap]
rs1820148	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1974871	0.89[CEU][hapmap];0.88[YRI][hapmap]
rs2113050	0.80[CEU][hapmap]
rs2161548	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2247650	0.82[CEU][hapmap]
rs2278018	0.85[CEU][hapmap]
rs2278019	0.85[CEU][hapmap]
rs2351010	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs2351011	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2432141	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2432142	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs251339	0.82[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs251340	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs251341	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs251343	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2548224	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2548226	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2548516	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2548527	0.82[YRI][hapmap]
rs2548530	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2548532	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2549784	0.92[YRI][hapmap]
rs2549794	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2617435	0.80[EUR][1000 genomes]
rs2617439	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2617447	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs27289	0.83[EUR][1000 genomes]
rs27290	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs27293	0.83[EUR][1000 genomes]
rs27295	0.83[EUR][1000 genomes]
rs27300	0.89[CEU][hapmap]
rs27306	1.00[CEU][hapmap];0.80[YRI][hapmap];0.88[EUR][1000 genomes]
rs27307	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs27436	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2762	0.81[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs27659	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs27660	0.88[EUR][1000 genomes]
rs27711	1.00[CEU][hapmap];0.80[YRI][hapmap];0.88[EUR][1000 genomes]
rs27712	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs27993	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2859491	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2910686	0.86[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2910687	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2910788	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2910789	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2910792	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2910793	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2927608	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2927609	1.00[CEU][hapmap];0.80[JPT][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3734015	0.86[CEU][hapmap]
rs3797796	0.96[CEU][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes]
rs38029	0.88[EUR][1000 genomes]
rs38031	0.88[EUR][1000 genomes]
rs38032	0.96[CEU][hapmap];0.80[JPT][hapmap];0.91[EUR][1000 genomes]
rs38033	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs38034	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs38038	0.83[EUR][1000 genomes]
rs38039	0.88[EUR][1000 genomes]
rs38042	0.82[CEU][hapmap]
rs38043	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs38044	0.83[EUR][1000 genomes]
rs3849749	1.00[CEU][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3909451	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs39602	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs4360063	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs4869313	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4869314	0.86[CEU][hapmap]
rs55770741	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6556942	0.96[CEU][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6859168	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6871162	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6873866	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6887500	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7703341	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7716222	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs7719705	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7726445	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7731592	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7733312	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9127	0.92[CEU][hapmap]
rs9314181	0.85[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ERAP2	Proximal transcriptional regulation
ENSG00000247121	RNA binding protein mediated regulation
ERAP2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)