SNP Report
Basic Infomation
| Name | rs2549781 dbSNP |
|---|---|
| Location | chr:5,96230122 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 160)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10044354 | 0.82[CEU][hapmap] |
| rs10051637 | 0.82[CEU][hapmap] |
| rs10061936 | 0.84[EUR][1000 genomes] |
| rs10069361 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs10071975 | 0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10076136 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1019503 | 0.93[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10434708 | 0.87[ASN][1000 genomes] |
| rs10434709 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs10463196 | 0.81[ASN][1000 genomes] |
| rs1056893 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11135482 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs11135483 | 0.87[ASN][1000 genomes] |
| rs11135484 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs11135485 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11750025 | 0.87[ASN][1000 genomes] |
| rs1216565 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1216568 | 0.85[EUR][1000 genomes] |
| rs1216569 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12189125 | 0.87[ASN][1000 genomes] |
| rs1230381 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1230382 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12516666 | 0.96[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12654015 | 0.87[ASN][1000 genomes] |
| rs12716486 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13163165 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13167902 | 0.90[CHB][hapmap];0.90[JPT][hapmap] |
| rs13189819 | 0.87[ASN][1000 genomes] |
| rs1363974 | 0.82[CEU][hapmap] |
| rs1363975 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1363977 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1423357 | 0.83[CEU][hapmap];0.83[CHB][hapmap] |
| rs1423568 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1559267 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1559354 | 0.87[ASN][1000 genomes] |
| rs1559355 | 0.96[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs17087165 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs171647 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1820149 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs187265 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs193993 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs193994 | 0.91[EUR][1000 genomes] |
| rs1974871 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1981846 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2042383 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2042385 | 1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2112974 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2113050 | 0.88[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2113189 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2113190 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2113191 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2161548 | 0.86[CEU][hapmap] |
| rs2161657 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2161658 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2247650 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2248374 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2255546 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2255633 | 1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2255634 | 1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2255637 | 1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2278018 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs2278019 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs2287988 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2303209 | 0.87[ASN][1000 genomes] |
| rs2351010 | 0.82[CEU][hapmap] |
| rs248215 | 0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap] |
| rs251339 | 0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs251342 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs251344 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2548520 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2548521 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2548522 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2548523 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2548524 | 1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2548525 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2548526 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2548527 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2548528 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2548529 | 0.93[CEU][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2548533 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2548534 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2548535 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2548536 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2548537 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2548538 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2548539 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2548540 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2549782 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2549784 | 0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2549785 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2549786 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2549787 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2549788 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2549789 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2549790 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2549791 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2549792 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2549795 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2549796 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2549797 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2549798 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2549799 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2549800 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2549801 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2617434 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs27290 | 0.82[CEU][hapmap] |
| rs27292 | 0.81[EUR][1000 genomes] |
| rs27294 | 0.96[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs27296 | 0.96[CEU][hapmap] |
| rs27300 | 0.82[CEU][hapmap] |
| rs27305 | 0.81[EUR][1000 genomes] |
| rs27397 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs27436 | 0.89[CEU][hapmap] |
| rs27613 | 0.96[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs2762 | 0.80[CEU][hapmap] |
| rs27659 | 0.83[CEU][hapmap] |
| rs27747 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs2910686 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2910688 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2910787 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs2927608 | 0.84[ASN][1000 genomes] |
| rs3096167 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3096168 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs31398 | 0.80[EUR][1000 genomes] |
| rs33934033 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3734015 | 0.96[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs38033 | 0.83[CEU][hapmap] |
| rs38035 | 0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs38036 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs38037 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs38040 | 0.96[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs38041 | 0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs38042 | 0.89[CEU][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs38043 | 0.83[CEU][hapmap] |
| rs3849750 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3909451 | 0.82[CEU][hapmap] |
| rs39602 | 0.83[CEU][hapmap] |
| rs42983 | 0.80[EUR][1000 genomes] |
| rs4360063 | 0.82[CEU][hapmap];0.82[JPT][hapmap] |
| rs4869311 | 0.87[ASN][1000 genomes] |
| rs4869312 | 0.87[ASN][1000 genomes] |
| rs4869313 | 0.86[ASN][1000 genomes] |
| rs4869314 | 1.00[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs56197090 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6556943 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6859160 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6868302 | 0.87[ASN][1000 genomes] |
| rs6870825 | 0.88[EUR][1000 genomes] |
| rs6871162 | 0.82[CEU][hapmap] |
| rs6873441 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6874656 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6879678 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7700332 | 0.93[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7713127 | 0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7716222 | 0.82[CEU][hapmap] |
| rs7721944 | 0.87[ASN][1000 genomes] |
| rs7722694 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7731592 | 0.83[CEU][hapmap] |
| rs7736466 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9127 | 0.85[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERAP2 | Proximal transcriptional regulation |
| ERAP1 | Distal transcriptional regulation |
| ENSG00000247121 | RNA binding protein mediated regulation |
| ERAP2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014