SNP Report

Basic Infomation

Name	rs27397 dbSNP
Location	chr:5,96340616
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 150)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10044354	0.85[CEU][hapmap]
rs10051637	0.85[CEU][hapmap]
rs10061936	0.86[EUR][1000 genomes]
rs10069361	1.00[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs10071975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10076136	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1019503	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs10434709	0.81[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap]
rs1056893	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs11135482	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs11135484	0.81[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap]
rs11135485	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1216565	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1216568	0.81[EUR][1000 genomes]
rs1216569	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1230381	0.87[EUR][1000 genomes]
rs1230382	0.87[EUR][1000 genomes]
rs12516666	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12716486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13167902	0.81[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap]
rs1363974	0.85[CEU][hapmap]
rs1363975	0.87[EUR][1000 genomes]
rs1363977	0.87[EUR][1000 genomes]
rs1423357	0.85[CEU][hapmap]
rs1423568	0.85[EUR][1000 genomes]
rs1559267	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1559355	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs17087165	0.85[EUR][1000 genomes]
rs171647	0.85[EUR][1000 genomes]
rs1820149	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs187265	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs193993	0.85[EUR][1000 genomes]
rs193994	0.85[EUR][1000 genomes]
rs1974871	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap]
rs1981846	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2042383	0.85[EUR][1000 genomes]
rs2042385	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2112974	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2113050	0.92[CEU][hapmap];0.84[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2113189	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2113190	0.85[EUR][1000 genomes]
rs2113191	0.85[EUR][1000 genomes]
rs2161548	0.85[CEU][hapmap]
rs2161657	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2161658	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2247650	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2248374	0.85[EUR][1000 genomes]
rs2255546	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs2255633	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2255634	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2255637	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2278018	0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2278019	0.81[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap]
rs2287988	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2351010	0.85[CEU][hapmap]
rs248215	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs251339	0.85[CEU][hapmap]
rs251342	0.85[EUR][1000 genomes]
rs251344	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs2548520	0.87[EUR][1000 genomes]
rs2548521	0.87[EUR][1000 genomes]
rs2548522	0.87[EUR][1000 genomes]
rs2548523	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2548524	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2548525	0.83[EUR][1000 genomes]
rs2548526	0.85[EUR][1000 genomes]
rs2548527	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2548528	0.85[EUR][1000 genomes]
rs2548529	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2548533	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2548534	0.85[EUR][1000 genomes]
rs2548535	0.85[EUR][1000 genomes]
rs2548536	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2548537	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2548538	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2548539	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2548540	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2549781	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2549782	0.96[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2549784	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2549785	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2549787	0.85[EUR][1000 genomes]
rs2549788	0.85[EUR][1000 genomes]
rs2549789	0.85[EUR][1000 genomes]
rs2549790	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2549791	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2549792	0.85[EUR][1000 genomes]
rs2549795	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2549796	0.94[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2549797	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2549798	0.83[EUR][1000 genomes]
rs2549799	0.84[EUR][1000 genomes]
rs2549800	0.87[EUR][1000 genomes]
rs2549801	0.87[EUR][1000 genomes]
rs2617434	0.81[EUR][1000 genomes]
rs27289	0.81[EUR][1000 genomes]
rs27290	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs27292	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27293	0.81[EUR][1000 genomes]
rs27294	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs27295	0.81[EUR][1000 genomes]
rs27296	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs27299	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs27300	0.85[CEU][hapmap]
rs27305	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27436	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs27613	1.00[CEU][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2762	0.84[CEU][hapmap]
rs27621	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs27659	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs27747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2910686	0.81[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]
rs2910688	0.87[EUR][1000 genomes]
rs2910787	1.00[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs3096167	0.81[EUR][1000 genomes]
rs3096168	0.80[EUR][1000 genomes]
rs31398	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs33934033	0.85[EUR][1000 genomes]
rs3734015	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs38033	0.85[CEU][hapmap]
rs38034	0.81[CEU][hapmap]
rs38035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs38036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs38037	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs38038	0.82[EUR][1000 genomes]
rs38040	1.00[CEU][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs38041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs38042	0.92[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38043	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs38044	0.82[EUR][1000 genomes]
rs3849750	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs3909451	0.85[CEU][hapmap]
rs39602	0.85[CEU][hapmap]
rs42983	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4360063	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs4869314	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs6556943	0.83[EUR][1000 genomes]
rs6859160	0.84[EUR][1000 genomes]
rs6870825	0.88[EUR][1000 genomes]
rs6871162	0.85[CEU][hapmap]
rs6873441	0.84[EUR][1000 genomes]
rs6874656	0.85[EUR][1000 genomes]
rs6879678	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7700332	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7713127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7716222	0.85[CEU][hapmap]
rs7722694	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7731592	0.85[CEU][hapmap]
rs7736466	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9127	0.88[CEU][hapmap];0.84[CHD][hapmap];0.90[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
LNPEP	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 11)

eQTL related gene	Source
ERAP2	SCAN
ERAP2	seeQTL
LRAP	Pritchard
ERAP2	SCAN
ERAP2	SCAN
LNPEP	SCAN
ERAP2	GTEx
ERAP2	GTEx
ERAP2	GTEx
ERAP2	GTEx
ERAP2	GTEx