SNP Report
Basic Infomation
| Name | rs2617442 dbSNP |
|---|---|
| Location | chr:5,96201579 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10044354 | 0.85[JPT][hapmap] |
| rs10051637 | 0.85[JPT][hapmap] |
| rs10069361 | 0.85[JPT][hapmap] |
| rs1363974 | 0.85[JPT][hapmap] |
| rs1423357 | 0.81[JPT][hapmap] |
| rs18059 | 0.85[JPT][hapmap] |
| rs2161548 | 0.86[JPT][hapmap] |
| rs2351010 | 0.85[JPT][hapmap] |
| rs2617438 | 0.86[YRI][hapmap] |
| rs27290 | 0.85[JPT][hapmap] |
| rs27294 | 0.81[JPT][hapmap] |
| rs27300 | 0.80[JPT][hapmap] |
| rs27436 | 0.86[JPT][hapmap] |
| rs27613 | 0.85[JPT][hapmap] |
| rs27659 | 0.86[JPT][hapmap] |
| rs2910787 | 0.85[JPT][hapmap] |
| rs2911134 | 0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs38034 | 0.85[JPT][hapmap] |
| rs38040 | 0.85[JPT][hapmap] |
| rs3909451 | 0.85[JPT][hapmap] |
| rs39602 | 0.81[JPT][hapmap] |
| rs4092590 | 0.91[CHB][hapmap];0.90[JPT][hapmap] |
| rs4360063 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
| rs6871162 | 0.85[JPT][hapmap] |
| rs7716222 | 0.85[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LNPEP | Distal transcriptional regulation |
| ENSG00000247121 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014