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rVarBase
SNP Report
Basic Infomation
Name
rs4092590  
dbSNP
Location
chr:5,96204295
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2617442
0.91[CHB][hapmap];0.90[JPT][hapmap]
rs27294
0.85[JPT][hapmap]
rs27300
0.81[JPT][hapmap]
rs2911134
0.82[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs39602
0.81[JPT][hapmap]
rs66468220
0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
LNPEP
Distal transcriptional regulation
ENSG00000247121
Distal transcriptional regulation
ERAP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
eQTL related gene
Source
ERAP2
seeQTL
CAST
SCAN
ERAP2
SCAN
FAM174A
SCAN
CAST
SCAN
ERAP2
SCAN