SNP Report

Basic Infomation

Name	rs2404352 dbSNP
Location	chr:12,40472920
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1005956	0.83[JPT][hapmap]
rs10506140	0.84[JPT][hapmap]
rs10747971	0.92[JPT][hapmap]
rs10747989	0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10784338	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10784353	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10784356	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10784359	0.89[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs10784369	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10877891	0.92[JPT][hapmap]
rs10877990	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10878031	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10878049	0.89[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10878089	0.88[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11174609	0.92[JPT][hapmap]
rs11174670	0.83[ASN][1000 genomes]
rs11174812	0.81[ASN][1000 genomes]
rs11174813	0.82[ASN][1000 genomes]
rs11175024	0.88[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12813098	0.93[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12823555	0.85[CEU][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1482281	0.81[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs1586038	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1600866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1813122	0.81[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2128277	0.92[JPT][hapmap]
rs2896825	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs2896905	0.84[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs3925535	0.89[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4767960	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4768200	0.90[JPT][hapmap]
rs4768204	0.83[JPT][hapmap]
rs530602	0.92[JPT][hapmap]
rs550669	0.93[JPT][hapmap]
rs6581504	0.93[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6650226	0.81[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs716268	0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7313209	0.92[JPT][hapmap]
rs7313231	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs7953129	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7954875	0.83[ASN][1000 genomes]
rs7959498	0.92[JPT][hapmap]
rs7960662	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7964150	0.92[JPT][hapmap]
rs9669240	0.89[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)