SNP Report
Basic Infomation
| Name | rs7954875 dbSNP |
|---|---|
| Location | chr:12,40392314 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1005956 | 0.83[JPT][hapmap] |
| rs10747971 | 0.95[CHB][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10784338 | 0.92[ASN][1000 genomes] |
| rs10784353 | 0.86[ASN][1000 genomes] |
| rs10784356 | 0.85[ASN][1000 genomes] |
| rs10784369 | 0.81[ASN][1000 genomes] |
| rs10877990 | 0.89[ASN][1000 genomes] |
| rs10878031 | 0.86[ASN][1000 genomes] |
| rs11174670 | 0.98[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1482281 | 0.86[CHB][hapmap];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1586038 | 0.82[ASN][1000 genomes] |
| rs1600866 | 0.82[ASN][1000 genomes] |
| rs1813122 | 0.86[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs2128275 | 0.80[ASN][1000 genomes] |
| rs2404352 | 0.83[ASN][1000 genomes] |
| rs4625545 | 0.80[ASN][1000 genomes] |
| rs4768204 | 0.83[JPT][hapmap] |
| rs550669 | 0.95[CHB][hapmap];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs555740 | 0.83[CHB][hapmap] |
| rs6650226 | 0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7313209 | 0.80[ASN][1000 genomes] |
| rs7313231 | 0.80[ASN][1000 genomes] |
| rs7953129 | 0.90[ASN][1000 genomes] |
| rs7959498 | 0.80[ASN][1000 genomes] |
| rs7964150 | 0.95[CHB][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014