SNP Report
Basic Infomation
| Name | rs555740 dbSNP |
|---|---|
| Location | chr:12,40382699 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747971 | 0.84[JPT][hapmap] |
| rs10784359 | 0.84[JPT][hapmap] |
| rs10877847 | 0.83[CHB][hapmap] |
| rs10877891 | 0.84[JPT][hapmap] |
| rs10878049 | 0.84[JPT][hapmap] |
| rs10878089 | 0.84[JPT][hapmap] |
| rs11174609 | 0.84[JPT][hapmap] |
| rs11175024 | 0.84[JPT][hapmap] |
| rs12813098 | 0.84[JPT][hapmap] |
| rs12823555 | 0.84[JPT][hapmap] |
| rs1482281 | 0.84[JPT][hapmap] |
| rs1813122 | 0.84[JPT][hapmap] |
| rs2128277 | 0.84[JPT][hapmap] |
| rs2896825 | 0.92[JPT][hapmap] |
| rs3925535 | 0.84[JPT][hapmap] |
| rs530602 | 0.84[JPT][hapmap] |
| rs550669 | 0.84[JPT][hapmap] |
| rs6581504 | 0.84[JPT][hapmap] |
| rs6650226 | 0.84[JPT][hapmap] |
| rs716268 | 0.84[JPT][hapmap] |
| rs7313209 | 0.84[JPT][hapmap] |
| rs7313231 | 0.84[JPT][hapmap] |
| rs7954875 | 0.83[CHB][hapmap] |
| rs7959498 | 0.84[JPT][hapmap] |
| rs7964150 | 0.84[JPT][hapmap] |
| rs7970812 | 0.84[JPT][hapmap] |
| rs9669240 | 0.84[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| LRRK2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014