SNP Report

Basic Infomation

Name	rs530602 dbSNP
Location	chr:12,40380035
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1005956	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs10506140	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs10747971	0.84[JPT][hapmap]
rs10784338	0.92[JPT][hapmap]
rs10784353	0.92[JPT][hapmap]
rs10784356	0.92[JPT][hapmap]
rs10784359	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10784369	0.92[JPT][hapmap]
rs10877891	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877990	0.92[JPT][hapmap]
rs10878049	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs10878089	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11174609	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174702	0.81[ASN][1000 genomes]
rs11175024	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12813098	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs12823555	1.00[JPT][hapmap]
rs1482281	0.85[JPT][hapmap]
rs1586038	0.92[JPT][hapmap]
rs1600866	0.92[JPT][hapmap]
rs1813122	0.85[JPT][hapmap]
rs2128277	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2404352	0.92[JPT][hapmap]
rs2896825	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3925535	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4625545	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs4768200	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs4768204	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs550669	0.85[JPT][hapmap]
rs555740	0.84[JPT][hapmap]
rs6581504	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6650226	0.85[JPT][hapmap]
rs716268	1.00[JPT][hapmap]
rs7313209	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7313231	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7953129	0.92[JPT][hapmap]
rs7959498	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7960662	0.92[JPT][hapmap]
rs7964150	0.84[JPT][hapmap]
rs7970812	0.88[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9669240	0.83[CHB][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)