SNP Report

Basic Infomation

Name	rs10877990 dbSNP
Location	chr:12,40429582
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 48)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1005956	0.83[JPT][hapmap]
rs10506140	0.83[JPT][hapmap]
rs10747971	0.84[CHD][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs10747989	0.93[YRI][hapmap]
rs10784338	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10784353	0.82[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10784356	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10784359	0.90[CHD][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs10784369	0.94[ASW][hapmap];0.85[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10877891	0.92[JPT][hapmap]
rs10878031	0.82[CEU][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10878049	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs10878089	0.90[CHD][hapmap];0.92[JPT][hapmap]
rs11174609	0.86[CHD][hapmap];0.92[JPT][hapmap]
rs11174670	0.89[ASN][1000 genomes]
rs11174809	0.85[ASN][1000 genomes]
rs11174812	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11174813	0.85[ASN][1000 genomes]
rs11175024	0.90[CHD][hapmap];0.92[JPT][hapmap]
rs12813098	0.92[JPT][hapmap]
rs12823555	0.92[JPT][hapmap]
rs1482281	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs1586038	0.88[ASW][hapmap];0.82[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1600866	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1813122	0.92[JPT][hapmap];0.82[YRI][hapmap]
rs2128275	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2128277	0.92[JPT][hapmap]
rs2404352	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2896825	0.88[CEU][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3925535	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs4625545	0.83[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4768200	0.90[JPT][hapmap]
rs4768204	0.83[JPT][hapmap]
rs530602	0.92[JPT][hapmap]
rs550669	0.92[JPT][hapmap]
rs6581504	0.92[JPT][hapmap]
rs6650226	0.92[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes]
rs7139216	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs716268	0.92[JPT][hapmap]
rs7313209	0.92[CEU][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7313231	0.82[ASW][hapmap];0.88[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7953129	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7954875	0.89[ASN][1000 genomes]
rs7959498	0.88[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7960662	0.85[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7964150	0.84[CHD][hapmap];0.92[JPT][hapmap]
rs7970812	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs9669240	0.92[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)