SNP Report
Basic Infomation
| Name | rs10506140 dbSNP |
|---|---|
| Location | chr:12,40350374 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1005956 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10784338 | 0.84[JPT][hapmap] |
| rs10784353 | 0.84[JPT][hapmap] |
| rs10784356 | 0.84[JPT][hapmap] |
| rs10784359 | 0.91[JPT][hapmap] |
| rs10784369 | 0.83[JPT][hapmap] |
| rs10877891 | 0.83[CHB][hapmap];0.92[JPT][hapmap] |
| rs10877990 | 0.83[JPT][hapmap] |
| rs10878049 | 0.92[JPT][hapmap] |
| rs10878089 | 0.91[JPT][hapmap] |
| rs11174450 | 0.89[CEU][hapmap] |
| rs11174478 | 0.92[CEU][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11174609 | 0.93[CHB][hapmap];0.91[JPT][hapmap] |
| rs11175024 | 0.91[JPT][hapmap] |
| rs12813098 | 0.92[JPT][hapmap] |
| rs12823555 | 0.91[JPT][hapmap] |
| rs1586038 | 0.83[JPT][hapmap] |
| rs1600866 | 0.84[JPT][hapmap] |
| rs2128277 | 0.88[CHB][hapmap];0.92[JPT][hapmap] |
| rs2404352 | 0.84[JPT][hapmap] |
| rs2896825 | 0.88[CHB][hapmap];0.92[JPT][hapmap] |
| rs3925535 | 0.92[JPT][hapmap] |
| rs4625545 | 0.82[CHB][hapmap] |
| rs4767956 | 0.85[CEU][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4768200 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs4768204 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs530602 | 0.94[CHB][hapmap];0.92[JPT][hapmap] |
| rs6581504 | 0.92[JPT][hapmap] |
| rs716268 | 0.92[JPT][hapmap] |
| rs7313209 | 0.92[JPT][hapmap] |
| rs7313231 | 0.82[CHB][hapmap];0.91[JPT][hapmap] |
| rs7953129 | 0.84[JPT][hapmap] |
| rs7959498 | 0.83[CHB][hapmap];0.92[JPT][hapmap] |
| rs7960662 | 0.84[JPT][hapmap] |
| rs7970812 | 0.83[CHB][hapmap] |
| rs9669240 | 0.92[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014