SNP Report

Basic Infomation

Name	rs4768204 dbSNP
Location	chr:12,40351086
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 38)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1005956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784338	0.83[JPT][hapmap]
rs10784353	0.83[JPT][hapmap]
rs10784356	0.83[JPT][hapmap]
rs10784359	0.91[JPT][hapmap]
rs10784369	0.83[JPT][hapmap]
rs10877835	0.84[ASW][hapmap]
rs10877891	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs10877990	0.83[JPT][hapmap]
rs10878049	0.91[JPT][hapmap]
rs10878089	0.91[JPT][hapmap]
rs11174450	0.89[CEU][hapmap]
rs11174478	0.92[CEU][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174609	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs11175024	0.91[JPT][hapmap]
rs12813098	0.91[JPT][hapmap]
rs12823555	0.91[JPT][hapmap]
rs1586038	0.83[JPT][hapmap]
rs1600866	0.83[JPT][hapmap]
rs2128277	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs2404352	0.83[JPT][hapmap]
rs2896825	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs3925535	0.91[JPT][hapmap]
rs4625545	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs4767956	0.85[CEU][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4768200	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs530602	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs6581504	0.91[JPT][hapmap]
rs716268	0.91[JPT][hapmap]
rs7313209	0.91[JPT][hapmap]
rs7313231	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7953129	0.83[JPT][hapmap]
rs7954875	0.83[JPT][hapmap]
rs7959498	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7960662	0.83[JPT][hapmap]
rs7970812	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs9669240	0.91[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)