SNP Report

Basic Infomation

Name	rs10878031 dbSNP
Location	chr:12,40438429
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10747989	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs10784338	0.82[CEU][hapmap];0.84[CHB][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10784353	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784356	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10784359	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10784369	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10877990	0.82[CEU][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10878049	0.86[CEU][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10878089	0.92[CEU][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11174670	0.86[ASN][1000 genomes]
rs11174809	0.83[ASN][1000 genomes]
rs11174812	0.84[ASN][1000 genomes]
rs11174813	0.85[ASN][1000 genomes]
rs11175024	0.92[CEU][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12813098	0.89[CEU][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12823555	0.82[CEU][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1482281	0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs1586038	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1600866	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1813122	0.94[YRI][hapmap];0.83[ASN][1000 genomes]
rs2128275	0.82[ASN][1000 genomes]
rs2404352	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2896825	0.84[ASN][1000 genomes]
rs2896905	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs3925535	0.93[CEU][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4625545	0.82[ASN][1000 genomes]
rs4767960	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6581504	0.89[CEU][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6650226	0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs716268	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7313209	0.82[ASN][1000 genomes]
rs7313231	0.82[ASN][1000 genomes]
rs7953129	0.84[CHB][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7954875	0.86[ASN][1000 genomes]
rs7959498	0.82[ASN][1000 genomes]
rs7960662	0.96[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9669240	0.93[CEU][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)