SNP Report
Basic Infomation
| Name | rs10747989 dbSNP |
|---|---|
| Location | chr:12,40436843 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10784338 | 0.90[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs10784353 | 0.93[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs10784356 | 0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs10784369 | 0.96[YRI][hapmap];0.80[AMR][1000 genomes] |
| rs10877990 | 0.93[YRI][hapmap] |
| rs10878031 | 0.94[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs11174732 | 1.00[JPT][hapmap] |
| rs11564162 | 0.83[CHB][hapmap] |
| rs1586038 | 0.86[YRI][hapmap] |
| rs1600866 | 0.93[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1813122 | 0.88[YRI][hapmap] |
| rs2404352 | 0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs6650226 | 0.87[YRI][hapmap] |
| rs7953129 | 0.90[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs7954510 | 0.83[CHB][hapmap] |
| rs7960662 | 0.93[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014