SNP Report
Name | rs1788242   dbSNP |
---|---|
Location | chr:18,67545978 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1124980 | 0.83[LWK][hapmap];0.86[YRI][hapmap] |
rs1619767 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs17081797 | 0.85[CEU][hapmap];0.89[JPT][hapmap] |
rs1788095 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs1788235 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs1788236 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs1788237 | 1.00[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1788243 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1790599 | 1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1790967 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1790971 | 0.88[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2051322 | 1.00[CEU][hapmap];0.84[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs2051323 | 0.88[MEX][hapmap];0.80[TSI][hapmap];0.81[AMR][1000 genomes] |
rs2051324 | 0.88[CHD][hapmap];0.94[GIH][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.81[AMR][1000 genomes] |
rs999146 | 0.89[LWK][hapmap];0.94[MEX][hapmap];0.80[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes] |
Symbol | Regulation type |
---|---|
CD226 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
PKIG | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014