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rVarBase
SNP Report
Basic Infomation
Name
rs17081797  
dbSNP
Location
chr:18,67555560
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12606481
0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1619767
0.99[ASN][1000 genomes]
rs1788237
0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1788242
0.85[CEU][hapmap];0.89[JPT][hapmap]
rs1788243
0.85[CEU][hapmap]
rs1790599
0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1790971
0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2051322
0.85[CEU][hapmap]
rs2051324
0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3737395
0.90[CHB][hapmap]
rSNP related genes
Symbol
Regulation type
CD226
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)