SNP Report
Basic Infomation
| Name | rs2051324 dbSNP |
|---|---|
| Location | chr:18,67550359 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10513983 | 0.84[TSI][hapmap];0.82[YRI][hapmap] |
| rs12606481 | 0.86[ASN][1000 genomes] |
| rs1619767 | 0.83[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17081797 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs1788095 | 0.86[AMR][1000 genomes] |
| rs1788237 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1788242 | 0.88[CHD][hapmap];0.94[GIH][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.81[AMR][1000 genomes] |
| rs1788243 | 0.84[GIH][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap] |
| rs1790599 | 1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1790967 | 0.83[AMR][1000 genomes] |
| rs1790971 | 0.90[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2051322 | 0.89[ASW][hapmap];0.84[GIH][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs2051323 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2156247 | 0.82[YRI][hapmap] |
| rs3737395 | 0.80[CHB][hapmap] |
| rs999146 | 1.00[CEU][hapmap];0.85[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CD226 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014