SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 22)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1007822	0.85[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs10513983	0.84[TSI][hapmap]
rs11151545	0.84[ASN][1000 genomes]
rs1124980	0.83[YRI][hapmap]
rs12964890	0.84[ASN][1000 genomes]
rs12969613	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs1619767	0.87[AMR][1000 genomes]
rs1788095	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1788235	0.84[AMR][1000 genomes]
rs1788236	0.87[AMR][1000 genomes]
rs1788237	0.96[YRI][hapmap];0.87[AMR][1000 genomes]
rs1788242	0.89[LWK][hapmap];0.94[MEX][hapmap];0.80[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs1788243	0.95[GIH][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.80[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs1790599	0.88[MEX][hapmap];0.80[TSI][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes]
rs1790966	0.93[ASN][1000 genomes]
rs1790967	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1790971	0.89[ASW][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes]
rs2051322	0.95[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes]
rs2051323	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2051324	1.00[CEU][hapmap];0.85[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66504140	0.84[ASN][1000 genomes]
rs67643815	0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CD226	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)