SNP Report
Basic Infomation
| Name | rs1619767 dbSNP |
|---|---|
| Location | chr:18,67553718 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12606481 | 0.86[ASN][1000 genomes] |
| rs17081797 | 0.99[ASN][1000 genomes] |
| rs1788095 | 0.94[AMR][1000 genomes] |
| rs1788235 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1788236 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1788237 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1788242 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1788243 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1790599 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1790967 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1790971 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2051322 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2051323 | 0.83[AMR][1000 genomes] |
| rs2051324 | 0.83[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs999146 | 0.87[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CD226 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014