SNP Report
Basic Infomation
| Name | rs12720253 dbSNP |
|---|---|
| Location | chr:19,10478683 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12720222 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.81[ASN][1000 genomes] |
| rs12720231 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12720233 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12720235 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12720248 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12720250 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12720260 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12720328 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12720352 | 0.80[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12981942 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17697947 | 1.00[CHB][hapmap];0.83[CHD][hapmap] |
| rs2304239 | 1.00[CHB][hapmap];0.83[CHD][hapmap] |
| rs280523 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3181046 | 1.00[CHB][hapmap] |
| rs3181047 | 1.00[CHB][hapmap] |
| rs35221071 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3745261 | 1.00[CHB][hapmap] |
| rs3745263 | 0.83[CHD][hapmap] |
| rs7254474 | 1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs8104304 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TYK2 | Proximal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| TYK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| GNG4 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014