SNP Report
Basic Infomation
| Name | rs12720222 dbSNP |
|---|---|
| Location | chr:19,10489171 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12720214 | 0.89[EUR][1000 genomes] |
| rs12720231 | 0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12720233 | 0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12720235 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes] |
| rs12720248 | 0.82[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12720250 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12720253 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.81[ASN][1000 genomes] |
| rs12720260 | 0.81[ASN][1000 genomes] |
| rs12720352 | 0.89[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap] |
| rs17000728 | 0.95[ASN][1000 genomes] |
| rs17000730 | 0.95[ASN][1000 genomes] |
| rs17697947 | 1.00[CHB][hapmap] |
| rs2231486 | 0.90[ASN][1000 genomes] |
| rs2304239 | 1.00[CHB][hapmap] |
| rs2304258 | 0.95[ASN][1000 genomes] |
| rs280523 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.81[ASN][1000 genomes] |
| rs28382774 | 0.90[ASN][1000 genomes] |
| rs3181046 | 1.00[CHB][hapmap] |
| rs3181047 | 1.00[CHB][hapmap] |
| rs3745261 | 1.00[CHB][hapmap] |
| rs55732741 | 0.90[ASN][1000 genomes] |
| rs7254474 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs7259156 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TYK2 | Proximal transcriptional regulation |
| MRPL4 | Distal transcriptional regulation |
| RAVER1 | Distal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| ENSG00000266978 | Distal transcriptional regulation |
| ICAM4 | Distal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| TYK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014