SNP Report
Basic Infomation
| Name | rs7254474 dbSNP |
|---|---|
| Location | chr:19,10509365 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12720218 | 0.83[MKK][hapmap] |
| rs12720222 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs12720235 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs12720253 | 1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs17000728 | 0.86[ASN][1000 genomes] |
| rs17000730 | 0.86[ASN][1000 genomes] |
| rs17697947 | 1.00[CHB][hapmap] |
| rs2231486 | 0.91[ASN][1000 genomes] |
| rs2304239 | 1.00[CHB][hapmap] |
| rs2304258 | 0.86[ASN][1000 genomes] |
| rs280523 | 1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs28382774 | 0.91[ASN][1000 genomes] |
| rs28382807 | 0.87[EUR][1000 genomes] |
| rs3181046 | 1.00[CHB][hapmap] |
| rs3181047 | 1.00[CHB][hapmap] |
| rs3745261 | 1.00[CHB][hapmap] |
| rs55732741 | 0.91[ASN][1000 genomes] |
| rs7259156 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDC37 | Proximal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| MIR1181 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| CDC37 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014