SNP Report
Basic Infomation
| Name | rs12720218 dbSNP |
|---|---|
| Location | chr:19,10490888 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12720215 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12720216 | 0.89[AFR][1000 genomes];0.80[EUR][1000 genomes] |
| rs12720219 | 1.00[ASN][1000 genomes] |
| rs12720280 | 1.00[ASN][1000 genomes] |
| rs12720281 | 1.00[ASN][1000 genomes] |
| rs12720320 | 1.00[ASN][1000 genomes] |
| rs28382807 | 1.00[ASN][1000 genomes] |
| rs59125425 | 1.00[ASN][1000 genomes] |
| rs6511694 | 1.00[ASN][1000 genomes] |
| rs6511695 | 1.00[CEU][hapmap];0.96[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs6511696 | 1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[TSI][hapmap] |
| rs7254474 | 0.83[MKK][hapmap] |
| rs7258615 | 1.00[ASN][1000 genomes] |
| rs8100910 | 1.00[ASN][1000 genomes] |
| rs8106630 | 1.00[ASN][1000 genomes] |
| rs8108236 | 0.87[GIH][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TYK2 | Proximal transcriptional regulation |
| PHACTR4 | Distal transcriptional regulation |
| LAMTOR5-AS1 | Distal transcriptional regulation |
| LAMTOR5 | Distal transcriptional regulation |
| ARHGEF4 | Distal transcriptional regulation |
| ENSG00000233221 | Distal transcriptional regulation |
| DNMT1 | Distal transcriptional regulation |
| MRPL4 | Distal transcriptional regulation |
| ICAM1 | Distal transcriptional regulation |
| ICAM4 | Distal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| RAVER1 | Distal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| ENSG00000267105 | Distal transcriptional regulation |
| ENSG00000266978 | Distal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| CEP135 | Distal transcriptional regulation |
| TYK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| LAD1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014