SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 20)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12720215	1.00[ASN][1000 genomes]
rs12720218	1.00[ASN][1000 genomes]
rs12720219	1.00[ASN][1000 genomes]
rs12720280	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12720281	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12720283	0.86[EUR][1000 genomes]
rs12720294	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12720302	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12720320	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382807	1.00[ASN][1000 genomes]
rs4804501	0.87[AMR][1000 genomes]
rs59125425	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6511694	1.00[ASN][1000 genomes]
rs6511695	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6511696	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7245877	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8100564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8100910	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8106630	1.00[ASN][1000 genomes]
rs8108236	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TYK2	Proximal transcriptional regulation
TYK2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)