SNP Report
Basic Infomation
| Name | rs12720302 dbSNP |
|---|---|
| Location | chr:19,10468097 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12720280 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12720281 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12720283 | 0.84[EUR][1000 genomes] |
| rs12720293 | 0.87[AFR][1000 genomes] |
| rs12720294 | 0.84[EUR][1000 genomes] |
| rs12720320 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs59125425 | 0.81[EUR][1000 genomes] |
| rs6511695 | 0.84[EUR][1000 genomes] |
| rs6511696 | 0.84[EUR][1000 genomes] |
| rs7245877 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7258615 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs8100564 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8100910 | 0.84[EUR][1000 genomes] |
| rs8108236 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TYK2 | Proximal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| TYK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014