SNP Report

Basic Infomation

Name	rs6511695 dbSNP
Location	chr:19,10474700
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12720215	1.00[ASN][1000 genomes]
rs12720218	1.00[CEU][hapmap];0.96[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs12720219	1.00[ASN][1000 genomes]
rs12720280	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12720281	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12720283	1.00[EUR][1000 genomes]
rs12720293	0.84[EUR][1000 genomes]
rs12720294	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12720302	0.84[EUR][1000 genomes]
rs12720320	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382807	1.00[ASN][1000 genomes]
rs34561079	1.00[CHD][hapmap]
rs59125425	1.00[ASN][1000 genomes]
rs6511694	1.00[ASN][1000 genomes]
rs6511696	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.85[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7245877	0.82[AMR][1000 genomes]
rs7258615	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8100564	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8100910	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8106630	1.00[ASN][1000 genomes]
rs8108236	1.00[CHD][hapmap];0.91[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TYK2	Proximal transcriptional regulation
ENSG00000267105	Distal transcriptional regulation
TYK2	Distal transcriptional regulation
ICAM1	Distal transcriptional regulation
TYK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 14)

eQTL related gene	Source
PDE4A	seeQTL
FLJ12825	SCAN
FOXP2	SCAN
DNAH6	SCAN
OR1N2	SCAN
C11orf1	SCAN
RP13-36C9.6	SCAN
LOC100130700	SCAN
CLRN1	SCAN
ERVWE1	SCAN
DSG3	SCAN
LOC100131508	SCAN
HLA-DPB2	SCAN
WDR88	SCAN