SNP Report
Basic Infomation
| Name | rs8108236 dbSNP |
|---|---|
| Location | chr:19,10465832 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12720215 | 1.00[ASN][1000 genomes] |
| rs12720218 | 0.87[GIH][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes] |
| rs12720219 | 1.00[ASN][1000 genomes] |
| rs12720280 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12720281 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12720283 | 0.84[EUR][1000 genomes] |
| rs12720294 | 0.91[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12720302 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12720320 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28382807 | 1.00[ASN][1000 genomes] |
| rs34561079 | 1.00[CHD][hapmap] |
| rs4804501 | 0.87[AMR][1000 genomes] |
| rs59125425 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6511694 | 1.00[ASN][1000 genomes] |
| rs6511695 | 1.00[CHD][hapmap];0.91[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6511696 | 1.00[CHD][hapmap];0.91[GIH][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.91[MKK][hapmap];0.84[EUR][1000 genomes] |
| rs7245877 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7258615 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8100564 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs8100910 | 0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8106630 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TYK2 | Proximal transcriptional regulation |
| RAVER1 | Distal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| TYK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014