SNP Report
Basic Infomation
| Name | rs3181046 dbSNP |
|---|---|
| Location | chr:19,10446135 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10404367 | 1.00[EUR][1000 genomes] |
| rs10409101 | 1.00[CHB][hapmap] |
| rs11880062 | 1.00[CHB][hapmap] |
| rs12720222 | 1.00[CHB][hapmap] |
| rs12720235 | 1.00[CHB][hapmap] |
| rs12720253 | 1.00[CHB][hapmap] |
| rs13346189 | 1.00[CHB][hapmap] |
| rs17697947 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2231486 | 1.00[EUR][1000 genomes] |
| rs2304238 | 0.96[ASN][1000 genomes] |
| rs2304239 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs280523 | 1.00[CHB][hapmap] |
| rs28372821 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs28382774 | 1.00[EUR][1000 genomes] |
| rs3181047 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35940589 | 1.00[AFR][1000 genomes] |
| rs3745261 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs3745263 | 0.82[JPT][hapmap] |
| rs55732741 | 1.00[EUR][1000 genomes] |
| rs7254474 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ICAM3 | Proximal transcriptional regulation |
| RAVER1 | Proximal transcriptional regulation |
| ICAM1 | Distal transcriptional regulation |
| ENSG00000266978 | Distal transcriptional regulation |
| ICAM4 | Distal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| MIR1181 | Distal transcriptional regulation |
| MIR4322 | Distal transcriptional regulation |
| ENSG00000267534 | Distal transcriptional regulation |
| DNMT1 | Distal transcriptional regulation |
| ZGLP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014