SNP Report
Basic Infomation
| Name | rs28372821 dbSNP |
|---|---|
| Location | chr:19,10614232 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10404367 | 1.00[EUR][1000 genomes] |
| rs10409101 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs10412246 | 1.00[ASN][1000 genomes] |
| rs11879547 | 1.00[ASN][1000 genomes] |
| rs11880062 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs13346189 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2231486 | 1.00[EUR][1000 genomes] |
| rs2304239 | 1.00[CHB][hapmap] |
| rs28382774 | 1.00[EUR][1000 genomes] |
| rs3181046 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs3181047 | 1.00[EUR][1000 genomes] |
| rs55732741 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KEAP1 | Proximal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
| KEAP1 | Distal transcriptional regulation |
| ENSG00000267197 | Distal transcriptional regulation |
| ATG4D | Distal transcriptional regulation |
| KRI1 | Distal transcriptional regulation |
| CDKN2D | Distal transcriptional regulation |
| S1PR5 | Distal transcriptional regulation |
| AP1M2 | Distal transcriptional regulation |
| ILF3-AS1 | Distal transcriptional regulation |
| MIR1181 | Distal transcriptional regulation |
| QTRT1 | Distal transcriptional regulation |
| ILF3 | Distal transcriptional regulation |
| KEAP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014