SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10409101	1.00[CHB][hapmap]
rs11880062	1.00[CHB][hapmap]
rs12720222	1.00[CHB][hapmap]
rs12720235	1.00[CHB][hapmap]
rs12720253	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs13346189	1.00[CHB][hapmap]
rs17000699	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17000708	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17000730	1.00[EUR][1000 genomes]
rs17697947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304258	1.00[EUR][1000 genomes]
rs2336691	1.00[GIH][hapmap]
rs280523	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs28372821	1.00[CHB][hapmap]
rs3181046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3181047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3745261	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3745263	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs56286467	1.00[EUR][1000 genomes]
rs7254474	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
ICAM3	Proximal transcriptional regulation
ICAM1	Distal transcriptional regulation
ENSG00000266978	Distal transcriptional regulation
ICAM4	Distal transcriptional regulation
ENSG00000267607	Distal transcriptional regulation
ICAM5	Distal transcriptional regulation
RAVER1	Distal transcriptional regulation
ICAM3	Distal transcriptional regulation
TYK2	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)