SNP Report
Basic Infomation
| Name | rs3745263 dbSNP |
|---|---|
| Location | chr:19,10439501 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12720253 | 0.83[CHD][hapmap] |
| rs17697947 | 1.00[CHD][hapmap];0.82[JPT][hapmap] |
| rs2304239 | 1.00[CHD][hapmap];0.82[JPT][hapmap] |
| rs280523 | 0.83[CHD][hapmap] |
| rs3181046 | 0.82[JPT][hapmap] |
| rs3181047 | 0.82[JPT][hapmap] |
| rs3745261 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3745262 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs5491 | 0.82[JPT][hapmap] |
| rs55651720 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55821462 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55925728 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs56003768 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56381248 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62131897 | 1.00[AFR][1000 genomes] |
| rs62131901 | 1.00[AFR][1000 genomes] |
| rs62640397 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAVER1 | Proximal transcriptional regulation |
| ICAM1 | Distal transcriptional regulation |
| RAVER1 | Distal transcriptional regulation |
| RAVER1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014