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rVarBase
SNP Report
Basic Infomation
Name
rs55651720  
dbSNP
Location
chr:19,10426182
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs3745261
1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3745262
1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3745263
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55821462
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55925728
0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56003768
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56381248
1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62131897
1.00[AFR][1000 genomes]
rs62131901
1.00[AFR][1000 genomes]
rs62640397
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000167807
Proximal transcriptional regulation
ICAM1
Distal transcriptional regulation
ENSG00000267607
Distal transcriptional regulation
ICAM5
Distal transcriptional regulation
ENSG00000266978
Distal transcriptional regulation
ICAM4
Distal transcriptional regulation
ZGLP1
Distal transcriptional regulation
ENSG00000167807
Distal transcriptional regulation
RAVER1
Distal transcriptional regulation
ICAM3
Distal transcriptional regulation
ENSG00000167807
RNA binding protein mediated regulation
FDX1L
RNA binding protein mediated regulation
ENSG00000267303
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)