SNP Report
Basic Infomation
| Name | rs10409101 dbSNP |
|---|---|
| Location | chr:19,10621208 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10405870 | 0.84[AMR][1000 genomes] |
| rs10411070 | 0.98[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs10412246 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10421996 | 0.82[AFR][1000 genomes] |
| rs1048287 | 0.89[ASW][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];0.81[AMR][1000 genomes] |
| rs11879547 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11880062 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11880127 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs11882859 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs13346189 | 0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.96[MKK][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2304239 | 1.00[CHB][hapmap] |
| rs28372821 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs28665500 | 0.98[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs3181046 | 1.00[CHB][hapmap] |
| rs74179932 | 0.81[AMR][1000 genomes] |
| rs8111926 | 0.84[AMR][1000 genomes] |
| rs8113472 | 0.89[ASW][hapmap];0.85[LWK][hapmap];0.80[MEX][hapmap];0.93[MKK][hapmap];0.84[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ATG4D | Distal transcriptional regulation |
| ENSG00000238364 | Distal transcriptional regulation |
| MIR1238 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014