SNP Report
Basic Infomation
| Name | rs17000728 dbSNP |
|---|---|
| Location | chr:19,10491187 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12720222 | 0.95[ASN][1000 genomes] |
| rs12720231 | 0.85[ASN][1000 genomes] |
| rs12720233 | 0.85[ASN][1000 genomes] |
| rs17000730 | 1.00[ASN][1000 genomes] |
| rs2231486 | 0.95[ASN][1000 genomes] |
| rs2304258 | 1.00[ASN][1000 genomes] |
| rs28382774 | 0.95[ASN][1000 genomes] |
| rs55732741 | 0.95[ASN][1000 genomes] |
| rs7254474 | 0.86[ASN][1000 genomes] |
| rs7259156 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TYK2 | Proximal transcriptional regulation |
| PHACTR4 | Distal transcriptional regulation |
| PRDX1 | Distal transcriptional regulation |
| LAMTOR5-AS1 | Distal transcriptional regulation |
| LAMTOR5 | Distal transcriptional regulation |
| ARHGEF4 | Distal transcriptional regulation |
| ENSG00000233221 | Distal transcriptional regulation |
| DNMT1 | Distal transcriptional regulation |
| MRPL4 | Distal transcriptional regulation |
| ICAM1 | Distal transcriptional regulation |
| ENSG00000266978 | Distal transcriptional regulation |
| ICAM4 | Distal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| RAVER1 | Distal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| ENSG00000267105 | Distal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| PATL2 | Distal transcriptional regulation |
| B2M | Distal transcriptional regulation |
| C16orf88 | Distal transcriptional regulation |
| IQCK | Distal transcriptional regulation |
| CEP135 | Distal transcriptional regulation |
| TMEM68 | Distal transcriptional regulation |
| TGS1 | Distal transcriptional regulation |
| TYK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014