SNP Report
Basic Infomation
| Name | rs12720233 dbSNP |
|---|---|
| Location | chr:19,10483643 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12720222 | 0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12720231 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12720235 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12720248 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12720250 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12720253 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12720260 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12720352 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12981942 | 0.93[AMR][1000 genomes] |
| rs17000728 | 0.85[ASN][1000 genomes] |
| rs17000730 | 0.85[ASN][1000 genomes] |
| rs2231486 | 0.81[ASN][1000 genomes] |
| rs2304258 | 0.85[ASN][1000 genomes] |
| rs280523 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28382774 | 0.81[ASN][1000 genomes] |
| rs35221071 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs55732741 | 0.81[ASN][1000 genomes] |
| rs8104304 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TYK2 | Proximal transcriptional regulation |
| TYK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014