SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12720222	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12720231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12720233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12720235	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12720250	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12720253	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12720260	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12720352	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12981942	0.93[AMR][1000 genomes]
rs280523	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35221071	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8104304	0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TYK2	Proximal transcriptional regulation
TYK2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)