SNP Report
Basic Infomation
| Name | rs12720328 dbSNP |
|---|---|
| Location | chr:19,10462672 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10411056 | 1.00[ASN][1000 genomes] |
| rs10416653 | 1.00[ASN][1000 genomes] |
| rs10418489 | 1.00[ASN][1000 genomes] |
| rs12720214 | 1.00[ASN][1000 genomes] |
| rs12720234 | 1.00[ASN][1000 genomes] |
| rs12720235 | 0.82[EUR][1000 genomes] |
| rs12720250 | 0.84[EUR][1000 genomes] |
| rs12720253 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12720260 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12720352 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12981942 | 0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2230399 | 1.00[ASN][1000 genomes] |
| rs280523 | 0.85[EUR][1000 genomes] |
| rs28382780 | 1.00[ASN][1000 genomes] |
| rs28382800 | 1.00[ASN][1000 genomes] |
| rs35221071 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61198164 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TYK2 | Proximal transcriptional regulation |
| RAVER1 | Distal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| TYK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014