SNP Report
Basic Infomation
| Name | rs2230399 dbSNP |
|---|---|
| Location | chr:19,10444603 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10411056 | 0.96[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10416653 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs10418489 | 1.00[ASN][1000 genomes] |
| rs12720214 | 1.00[ASN][1000 genomes] |
| rs12720234 | 1.00[ASN][1000 genomes] |
| rs12720328 | 1.00[ASN][1000 genomes] |
| rs12720352 | 1.00[ASN][1000 genomes] |
| rs12981942 | 1.00[ASN][1000 genomes] |
| rs28382780 | 1.00[ASN][1000 genomes] |
| rs28382800 | 1.00[ASN][1000 genomes] |
| rs35221071 | 1.00[ASN][1000 genomes] |
| rs61198164 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAVER1 | Proximal transcriptional regulation |
| HCFC1R1 | Distal transcriptional regulation |
| THOC6 | Distal transcriptional regulation |
| ENSG00000267105 | Distal transcriptional regulation |
| ICAM1 | Distal transcriptional regulation |
| ENSG00000266978 | Distal transcriptional regulation |
| ICAM4 | Distal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| ZGLP1 | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| DNMT1 | Distal transcriptional regulation |
| MIR1181 | Distal transcriptional regulation |
| MIR4322 | Distal transcriptional regulation |
| ENSG00000267534 | Distal transcriptional regulation |
| ENSG00000167807 | Distal transcriptional regulation |
| FDX1L | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| ENSG00000201524 | Distal transcriptional regulation |
| PKN2 | Distal transcriptional regulation |
| HFM1 | Distal transcriptional regulation |
| WDR47 | Distal transcriptional regulation |
| RPS24 | Distal transcriptional regulation |
| NUCB2 | Distal transcriptional regulation |
| ENSG00000246174 | Distal transcriptional regulation |
| ERGIC2 | Distal transcriptional regulation |
| HMGB1 | Distal transcriptional regulation |
| USPL1 | Distal transcriptional regulation |
| DUT | Distal transcriptional regulation |
| ENSG00000259488 | Distal transcriptional regulation |
| RNU5B-1 | Distal transcriptional regulation |
| ARID3B | Distal transcriptional regulation |
| BANP | Distal transcriptional regulation |
| EIF1 | Distal transcriptional regulation |
| TOB1 | Distal transcriptional regulation |
| TOB1-AS1 | Distal transcriptional regulation |
| MRPL35 | Distal transcriptional regulation |
| RPL31 | Distal transcriptional regulation |
| PTPN18 | Distal transcriptional regulation |
| ENSG00000260236 | Distal transcriptional regulation |
| PTPN23 | Distal transcriptional regulation |
| IL17RE | Distal transcriptional regulation |
| LCORL | Distal transcriptional regulation |
| RHOH | Distal transcriptional regulation |
| PPP1R10 | Distal transcriptional regulation |
| SRPK1 | Distal transcriptional regulation |
| MICALL2 | Distal transcriptional regulation |
| RFX3 | Distal transcriptional regulation |
| ENSG00000227071 | Distal transcriptional regulation |
| ZNF333 | Distal transcriptional regulation |
| EMR3 | Distal transcriptional regulation |
| PSMC4 | Distal transcriptional regulation |
| ENSG00000256383 | Distal transcriptional regulation |
| ZNF302 | Distal transcriptional regulation |
| ICAM3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014