SNP Report
Basic Infomation
| Name | rs61198164 dbSNP |
|---|---|
| Location | chr:19,10445165 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10411056 | 1.00[ASN][1000 genomes] |
| rs10416653 | 1.00[ASN][1000 genomes] |
| rs10418489 | 1.00[ASN][1000 genomes] |
| rs12720214 | 1.00[ASN][1000 genomes] |
| rs12720234 | 1.00[ASN][1000 genomes] |
| rs12720328 | 1.00[ASN][1000 genomes] |
| rs12720352 | 1.00[ASN][1000 genomes] |
| rs12981942 | 1.00[ASN][1000 genomes] |
| rs2230399 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28382780 | 1.00[ASN][1000 genomes] |
| rs28382800 | 1.00[ASN][1000 genomes] |
| rs35221071 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAVER1 | Proximal transcriptional regulation |
| ENSG00000267105 | Distal transcriptional regulation |
| ICAM1 | Distal transcriptional regulation |
| ENSG00000266978 | Distal transcriptional regulation |
| ICAM4 | Distal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| ZGLP1 | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| DNMT1 | Distal transcriptional regulation |
| MIR1181 | Distal transcriptional regulation |
| MIR4322 | Distal transcriptional regulation |
| ENSG00000267534 | Distal transcriptional regulation |
| ENSG00000167807 | Distal transcriptional regulation |
| FDX1L | Distal transcriptional regulation |
| ENSG00000201524 | Distal transcriptional regulation |
| EIF1 | Distal transcriptional regulation |
| TOB1 | Distal transcriptional regulation |
| TOB1-AS1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014