SNP Report
Basic Infomation
| Name | rs28382800 dbSNP |
|---|---|
| Location | chr:19,10501017 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10411056 | 1.00[ASN][1000 genomes] |
| rs10416653 | 1.00[ASN][1000 genomes] |
| rs10418489 | 1.00[ASN][1000 genomes] |
| rs12720214 | 1.00[ASN][1000 genomes] |
| rs12720234 | 1.00[ASN][1000 genomes] |
| rs12720328 | 1.00[ASN][1000 genomes] |
| rs12720352 | 1.00[ASN][1000 genomes] |
| rs12981942 | 1.00[ASN][1000 genomes] |
| rs2230399 | 1.00[ASN][1000 genomes] |
| rs28382780 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28382788 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35221071 | 1.00[ASN][1000 genomes] |
| rs55939834 | 0.96[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs61198164 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MRPL4 | Distal transcriptional regulation |
| ENSG00000267105 | Distal transcriptional regulation |
| ICAM1 | Distal transcriptional regulation |
| ICAM4 | Distal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| RAVER1 | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| ENSG00000266978 | Distal transcriptional regulation |
| EMP3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014