SNP Report
Basic Infomation
| Name | rs11230658 dbSNP |
|---|---|
| Location | chr:11,61046876 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 77)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1037448 | 0.81[ASW][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];0.88[YRI][hapmap] |
| rs10792312 | 0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs10897150 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs10897155 | 1.00[EUR][1000 genomes] |
| rs10897158 | 0.81[ASW][hapmap];0.91[LWK][hapmap] |
| rs1108769 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230650 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11230659 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11230664 | 0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230666 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11230678 | 0.85[EUR][1000 genomes] |
| rs1132797 | 0.94[ASN][1000 genomes] |
| rs11822158 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs12275530 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12275843 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12277294 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12286866 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12289370 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12290116 | 1.00[ASN][1000 genomes] |
| rs12291333 | 0.95[ASN][1000 genomes] |
| rs12791961 | 0.81[ASW][hapmap];0.91[LWK][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap] |
| rs1377457 | 0.80[YRI][hapmap];0.92[EUR][1000 genomes] |
| rs1377458 | 1.00[EUR][1000 genomes] |
| rs2001746 | 0.96[AMR][1000 genomes] |
| rs2260655 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2286878 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2305465 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2508466 | 0.83[CHD][hapmap] |
| rs2512809 | 0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes] |
| rs2512811 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs2512812 | 1.00[ASN][1000 genomes] |
| rs2513329 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2513330 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2860519 | 0.81[ASW][hapmap];0.91[LWK][hapmap] |
| rs28720249 | 0.94[ASN][1000 genomes] |
| rs28720255 | 0.94[ASN][1000 genomes] |
| rs28720261 | 0.94[ASN][1000 genomes] |
| rs28720297 | 0.94[ASN][1000 genomes] |
| rs28720301 | 0.94[ASN][1000 genomes] |
| rs28720334 | 0.94[ASN][1000 genomes] |
| rs28720346 | 0.94[ASN][1000 genomes] |
| rs28720355 | 0.94[ASN][1000 genomes] |
| rs2943807 | 0.81[ASW][hapmap];0.88[LWK][hapmap] |
| rs3017602 | 0.81[ASW][hapmap];0.91[LWK][hapmap] |
| rs3019198 | 0.81[ASW][hapmap];0.91[LWK][hapmap] |
| rs3741268 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs3972757 | 1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4939513 | 0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4939514 | 1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[ASN][1000 genomes] |
| rs4939515 | 1.00[ASN][1000 genomes] |
| rs4939517 | 0.81[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[YRI][hapmap];0.83[ASN][1000 genomes] |
| rs56269746 | 0.94[ASN][1000 genomes] |
| rs56352432 | 1.00[ASN][1000 genomes] |
| rs57265008 | 0.92[EUR][1000 genomes] |
| rs58431028 | 0.83[ASN][1000 genomes] |
| rs60818979 | 0.89[ASN][1000 genomes] |
| rs61061872 | 0.89[ASN][1000 genomes] |
| rs61554568 | 0.94[ASN][1000 genomes] |
| rs61744427 | 1.00[ASN][1000 genomes] |
| rs6591650 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6591651 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs7107608 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7108142 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs7108797 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7111608 | 0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7118023 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7120594 | 1.00[ASN][1000 genomes] |
| rs73490303 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7394502 | 0.85[EUR][1000 genomes] |
| rs7397033 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs7607 | 0.81[ASW][hapmap];0.91[LWK][hapmap] |
| rs7934735 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7940665 | 0.84[ASN][1000 genomes] |
| rs7951574 | 0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs879647 | 0.81[ASW][hapmap];0.91[LWK][hapmap] |
| rs9651726 | 0.81[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.80[MKK][hapmap];0.81[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9704187 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VWCE | Distal transcriptional regulation |
| DDB1 | Distal transcriptional regulation |
| VWCE | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014