SNP Report
Basic Infomation
| Name | rs11230678 dbSNP |
|---|---|
| Location | chr:11,61139869 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897155 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1108769 | 0.85[EUR][1000 genomes] |
| rs11230658 | 0.85[EUR][1000 genomes] |
| rs11230665 | 1.00[ASN][1000 genomes] |
| rs12275843 | 0.85[EUR][1000 genomes] |
| rs12286866 | 0.85[EUR][1000 genomes] |
| rs12791961 | 1.00[ASN][1000 genomes] |
| rs1377457 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1377458 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2260655 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2305465 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2513329 | 0.88[AMR][1000 genomes] |
| rs28720260 | 1.00[ASN][1000 genomes] |
| rs35245221 | 1.00[ASN][1000 genomes] |
| rs3741268 | 0.82[AMR][1000 genomes] |
| rs3892885 | 1.00[ASN][1000 genomes] |
| rs3972757 | 0.82[AMR][1000 genomes] |
| rs4939514 | 0.82[AMR][1000 genomes] |
| rs7107608 | 0.85[EUR][1000 genomes] |
| rs73490303 | 0.85[EUR][1000 genomes] |
| rs73492338 | 1.00[ASN][1000 genomes] |
| rs73492366 | 1.00[ASN][1000 genomes] |
| rs7394502 | 0.97[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs7925969 | 1.00[ASN][1000 genomes] |
| rs7932094 | 1.00[ASN][1000 genomes] |
| rs7937419 | 1.00[ASN][1000 genomes] |
| rs9704187 | 0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM138 | Distal transcriptional regulation |
| DDB1 | Distal transcriptional regulation |
| DAK | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014