SNP Report

Basic Infomation

Name	rs10792312 dbSNP
Location	chr:11,61122341
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 42)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1037448	0.88[ASW][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];0.88[YRI][hapmap]
rs10897150	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10897158	0.88[ASW][hapmap];0.91[LWK][hapmap]
rs1108769	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11230650	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11230658	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11230659	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11230664	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11230666	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs11822158	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs12275843	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs12277294	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap]
rs12791961	0.88[ASW][hapmap];0.91[LWK][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap]
rs1377457	0.80[YRI][hapmap]
rs2260655	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs2286878	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2305465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs2508466	0.83[CHD][hapmap]
rs2512809	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[LWK][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap]
rs2512811	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2513329	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2513330	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs2860519	0.88[ASW][hapmap];0.91[LWK][hapmap]
rs2943807	0.88[ASW][hapmap];0.88[LWK][hapmap]
rs2943808	0.82[ASW][hapmap]
rs3017602	0.87[ASW][hapmap];0.91[LWK][hapmap]
rs3019198	0.88[ASW][hapmap];0.91[LWK][hapmap]
rs3741268	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs3972757	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs4939513	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap]
rs4939514	1.00[CHD][hapmap];0.90[GIH][hapmap]
rs4939517	0.88[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[YRI][hapmap]
rs6591651	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7108142	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs7108797	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap]
rs7111608	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs7118023	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7397033	1.00[CHB][hapmap]
rs7607	0.88[ASW][hapmap];0.91[LWK][hapmap]
rs7951574	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs879647	0.88[ASW][hapmap];0.91[LWK][hapmap]
rs9651726	0.88[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.80[MKK][hapmap]

rSNP related genes

Symbol	Regulation type
CYBASC3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)