SNP Report

Basic Infomation

Name	rs2286878 dbSNP
Location	chr:11,61018732
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 71)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10792312	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10897150	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1108769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11230650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11230658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11230659	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11230664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11230666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1132797	1.00[ASN][1000 genomes]
rs11822158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12275530	0.94[ASN][1000 genomes]
rs12275843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12277294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12286866	0.94[ASN][1000 genomes]
rs12289370	0.94[ASN][1000 genomes]
rs12290116	0.94[ASN][1000 genomes]
rs12291333	0.89[ASN][1000 genomes]
rs2001746	0.83[ASN][1000 genomes]
rs2230357	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2260655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2305465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2512809	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2512811	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2512812	0.94[ASN][1000 genomes]
rs2513329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2513330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28412205	0.82[ASN][1000 genomes]
rs28720249	1.00[ASN][1000 genomes]
rs28720254	1.00[AFR][1000 genomes]
rs28720255	1.00[ASN][1000 genomes]
rs28720261	1.00[ASN][1000 genomes]
rs28720262	1.00[AFR][1000 genomes]
rs28720285	1.00[AFR][1000 genomes]
rs28720289	0.81[AFR][1000 genomes]
rs28720295	0.81[AFR][1000 genomes]
rs28720297	1.00[ASN][1000 genomes]
rs28720301	1.00[ASN][1000 genomes]
rs28720315	0.81[AFR][1000 genomes]
rs28720334	1.00[ASN][1000 genomes]
rs28720346	1.00[ASN][1000 genomes]
rs28720353	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs28720355	1.00[ASN][1000 genomes]
rs28720366	0.81[AFR][1000 genomes]
rs3741268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3972757	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4939513	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4939514	0.94[ASN][1000 genomes]
rs4939515	0.94[ASN][1000 genomes]
rs4939517	1.00[JPT][hapmap]
rs56269746	1.00[ASN][1000 genomes]
rs56352432	0.94[ASN][1000 genomes]
rs58431028	0.88[ASN][1000 genomes]
rs60802278	0.83[ASN][1000 genomes]
rs60818979	0.94[ASN][1000 genomes]
rs61061872	0.94[ASN][1000 genomes]
rs61554568	1.00[ASN][1000 genomes]
rs61744427	0.94[ASN][1000 genomes]
rs6591650	0.94[ASN][1000 genomes]
rs6591651	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7107608	0.94[ASN][1000 genomes]
rs7108142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7108797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7111608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7118023	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7120594	0.94[ASN][1000 genomes]
rs73490303	0.94[ASN][1000 genomes]
rs7397033	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7934735	0.94[ASN][1000 genomes]
rs7951574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9651726	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9704187	0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PGA4	RNA binding protein mediated regulation
PGA5	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)