SNP Report

Basic Infomation

Name	rs7108797 dbSNP
Location	chr:11,61027388
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 68)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10792312	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap]
rs10897150	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10897155	0.92[EUR][1000 genomes]
rs1108769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11230650	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230658	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11230659	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11230664	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11230666	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1132797	0.94[ASN][1000 genomes]
rs11822158	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12275530	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275843	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12277294	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286866	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12289370	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12290116	0.89[ASN][1000 genomes]
rs12291333	0.84[ASN][1000 genomes]
rs1377457	0.84[EUR][1000 genomes]
rs1377458	0.92[EUR][1000 genomes]
rs2001746	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2260655	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2305465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2508466	0.83[CHD][hapmap]
rs2512809	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[ASN][1000 genomes]
rs2512811	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.89[ASN][1000 genomes]
rs2512812	0.89[ASN][1000 genomes]
rs2513329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2513330	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.89[ASN][1000 genomes]
rs28412205	0.89[ASN][1000 genomes]
rs28720249	0.94[ASN][1000 genomes]
rs28720255	0.94[ASN][1000 genomes]
rs28720261	0.94[ASN][1000 genomes]
rs28720297	0.94[ASN][1000 genomes]
rs28720301	0.94[ASN][1000 genomes]
rs28720334	0.94[ASN][1000 genomes]
rs28720346	0.94[ASN][1000 genomes]
rs28720355	0.94[ASN][1000 genomes]
rs3741268	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.89[ASN][1000 genomes]
rs3972757	1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4939513	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4939514	1.00[CHD][hapmap];0.95[GIH][hapmap];0.80[LWK][hapmap];0.89[ASN][1000 genomes]
rs4939515	0.89[ASN][1000 genomes]
rs4939517	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs56269746	0.94[ASN][1000 genomes]
rs56352432	0.89[ASN][1000 genomes]
rs57265008	1.00[EUR][1000 genomes]
rs58431028	0.83[ASN][1000 genomes]
rs60802278	0.89[ASN][1000 genomes]
rs60818979	1.00[ASN][1000 genomes]
rs61061872	1.00[ASN][1000 genomes]
rs61554568	0.94[ASN][1000 genomes]
rs61744427	0.89[ASN][1000 genomes]
rs6591650	0.89[ASN][1000 genomes]
rs6591651	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7107608	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7108142	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.89[ASN][1000 genomes]
rs7111608	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7118023	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7120594	0.89[ASN][1000 genomes]
rs7120780	0.82[EUR][1000 genomes]
rs73490303	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7397033	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7934735	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7951574	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9651726	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9704187	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
VWCE	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)