SNP Report
Basic Infomation
| Name | rs7120780 dbSNP |
|---|---|
| Location | chr:11,61129724 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230654 | 0.83[GIH][hapmap] |
| rs11230660 | 0.83[GIH][hapmap] |
| rs12275530 | 0.82[EUR][1000 genomes] |
| rs12277294 | 0.82[EUR][1000 genomes] |
| rs12279557 | 0.83[GIH][hapmap] |
| rs12280940 | 1.00[GIH][hapmap] |
| rs12284888 | 0.83[GIH][hapmap] |
| rs2444554 | 0.83[GIH][hapmap] |
| rs28720245 | 1.00[TSI][hapmap] |
| rs28756969 | 1.00[TSI][hapmap] |
| rs57265008 | 0.82[EUR][1000 genomes] |
| rs7108797 | 0.82[EUR][1000 genomes] |
| rs7131315 | 0.83[GIH][hapmap] |
| rs7932094 | 0.82[EUR][1000 genomes] |
| rs7940261 | 0.83[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM138 | Proximal transcriptional regulation |
| CYBASC3 | Proximal transcriptional regulation |
| DDB1 | Distal transcriptional regulation |
| DAK | Distal transcriptional regulation |
| HOXC9 | Distal transcriptional regulation |
| HOXC6 | Distal transcriptional regulation |
| PSMA3 | Distal transcriptional regulation |
| SLC16A3 | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| CPSF7 | Distal transcriptional regulation |
| SDHAF2 | Distal transcriptional regulation |
| ENSG00000256591 | Distal transcriptional regulation |
| TMEM216 | Distal transcriptional regulation |
| DAGLA | Distal transcriptional regulation |
| VPS37C | Distal transcriptional regulation |
| RCC1 | Distal transcriptional regulation |
| SNHG3 | Distal transcriptional regulation |
| PDCD11 | Distal transcriptional regulation |
| IL6ST | Distal transcriptional regulation |
| ENSG00000227908 | Distal transcriptional regulation |
| CYBASC3 | RNA binding protein mediated regulation |
| TMEM138 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014