SNP Report
Basic Infomation
| Name | rs28720245 dbSNP |
|---|---|
| Location | chr:11,61100965 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs28720241 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28720242 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28720253 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28720263 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28720288 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28720320 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28756969 | 1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28891995 | 1.00[EUR][1000 genomes] |
| rs57265354 | 1.00[EUR][1000 genomes] |
| rs7120780 | 1.00[TSI][hapmap] |
| rs73492389 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DAK | Proximal transcriptional regulation |
| DDB1 | Proximal transcriptional regulation |
| CASC3 | Distal transcriptional regulation |
| CYBASC3 | Distal transcriptional regulation |
| TMEM138 | Distal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| HIST2H2BE | Distal transcriptional regulation |
| HIST2H2AC | Distal transcriptional regulation |
| TWF1 | Distal transcriptional regulation |
| CCT2 | Distal transcriptional regulation |
| ING1 | Distal transcriptional regulation |
| DDB1 | Distal transcriptional regulation |
| VWCE | Distal transcriptional regulation |
| DAK | Distal transcriptional regulation |
| TMEM216 | Distal transcriptional regulation |
| CDCA4 | Distal transcriptional regulation |
| ENSG00000256591 | Distal transcriptional regulation |
| CPSF7 | Distal transcriptional regulation |
| SDHAF2 | Distal transcriptional regulation |
| DAK | RNA binding protein mediated regulation |
| DDB1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014