SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897151	0.89[AMR][1000 genomes]
rs11230654	0.83[GIH][hapmap]
rs11230660	0.83[GIH][hapmap]
rs12270770	0.89[AMR][1000 genomes]
rs12272389	0.89[AMR][1000 genomes]
rs12279557	0.83[GIH][hapmap];0.81[LWK][hapmap];0.89[AMR][1000 genomes]
rs12284888	0.83[GIH][hapmap]
rs2002680	0.90[EUR][1000 genomes]
rs2444554	0.83[GIH][hapmap];0.81[LWK][hapmap]
rs7120780	1.00[GIH][hapmap]
rs7131315	0.83[GIH][hapmap]
rs7940261	0.83[GIH][hapmap]
rs7945020	0.89[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PGA4	RNA binding protein mediated regulation
PGA5	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)