SNP Report
Basic Infomation
| Name | rs10897151 dbSNP |
|---|---|
| Location | chr:11,61063586 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230649 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11230665 | 0.83[EUR][1000 genomes] |
| rs12270770 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12272389 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12279557 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12280596 | 0.83[EUR][1000 genomes] |
| rs12280940 | 0.89[AMR][1000 genomes] |
| rs12284888 | 0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12293340 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12295381 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1811514 | 0.90[AFR][1000 genomes] |
| rs2444554 | 0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4453253 | 0.83[EUR][1000 genomes] |
| rs4939520 | 0.83[EUR][1000 genomes] |
| rs61364595 | 1.00[EUR][1000 genomes] |
| rs7113586 | 0.83[EUR][1000 genomes] |
| rs7123049 | 0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7131315 | 0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73490310 | 0.83[EUR][1000 genomes] |
| rs73492338 | 0.83[EUR][1000 genomes] |
| rs7940261 | 1.00[EUR][1000 genomes] |
| rs7945020 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7948623 | 0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VWCE | Proximal transcriptional regulation |
| DDB1 | Distal transcriptional regulation |
| ENSG00000256591 | Distal transcriptional regulation |
| CPSF7 | Distal transcriptional regulation |
| SDHAF2 | Distal transcriptional regulation |
| CYBASC3 | Distal transcriptional regulation |
| TMEM138 | Distal transcriptional regulation |
| H1FX-AS1 | Distal transcriptional regulation |
| H1FX | Distal transcriptional regulation |
| DAK | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014