SNP Report
Basic Infomation
| Name | rs12293340 dbSNP |
|---|---|
| Location | chr:11,61058844 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897151 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11230649 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11230665 | 0.82[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12270770 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12272389 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12279557 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12280596 | 0.83[EUR][1000 genomes] |
| rs12284888 | 1.00[EUR][1000 genomes] |
| rs12295381 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2444554 | 1.00[EUR][1000 genomes] |
| rs4453253 | 0.83[EUR][1000 genomes] |
| rs4939520 | 0.83[EUR][1000 genomes] |
| rs61364595 | 0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7113586 | 0.83[EUR][1000 genomes] |
| rs7123049 | 1.00[EUR][1000 genomes] |
| rs7131315 | 1.00[EUR][1000 genomes] |
| rs73490310 | 0.84[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs73492338 | 0.81[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7940261 | 1.00[EUR][1000 genomes] |
| rs7945020 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7948623 | 0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VWCE | Distal transcriptional regulation |
| DDB1 | Distal transcriptional regulation |
| DAK | Distal transcriptional regulation |
| VWCE | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014